Documented functions with links to source¶

Program to assign a series of 3D models to class averages

class segclassmodel.SegClassModelPar[source]¶

Methods

define_parameters_and_their_properties
define_program_states
set_inp_multiple_models

class segclassmodel.SegClassModelPrepare(parset=None)[source]¶

Methods

prepare_sr3d_object_with_filter_settings

class segclassmodel.SegClassModelProject(parset=None)[source]¶

Methods

get_helical_and_point_group_symmetry_from_volume
get_prj_info_nt
get_proj_refs_file_name
merge_prj_stacks_and_collect_prj_info
prepare_class_avg_stack
prepare_merged_stack_of_projections
prepare_prj_through_series_of_models
prepare_sr3d_object_with_filter_settings
prepare_volume_for_projection
summarize_prj_info

prepare_volume_for_projection(projection_size, sr3d, each_model_id, each_reference)[source]¶

summarize_prj_info(projection_info, each_model_id, projection_stack, projection_parameters)[source]¶

class segclassmodel.SegClassModel(parset=None)[source]¶

Methods

get_helical_and_point_group_symmetry_from_volume
get_matched_prj_id_from_alignment_stack_and_assign_model
get_prj_info_nt
get_proj_refs_file_name
launch_segmentalign2d_to_match_classes_against_projections
match_reprojections_to_classes
merge_prj_stacks_and_collect_prj_info
perform_projection_or_pick_up_completed_prj_in_case_of_mpi
prepare_class_avg_stack
prepare_merged_stack_of_projections
prepare_prj_through_series_of_models
prepare_sr3d_object_with_filter_settings
prepare_volume_for_projection
summarize_prj_info
udpate_segments_in_spring_db_with_assigned_model

launch_segmentalign2d_to_match_classes_against_projections(infilestack, merged_prj_stack)[source]¶

get_matched_prj_id_from_alignment_stack_and_assign_model(infilestack, prj_info, reduced_classes)[source]¶

udpate_segments_in_spring_db_with_assigned_model(cls_assigned_models)[source]¶

class segclassmodel_mpi.SegClassModelMpi(parset=None)[source]¶

Methods

get_helical_and_point_group_symmetry_from_volume
get_matched_prj_id_from_alignment_stack_and_assign_model
get_prj_info_nt
get_proj_refs_file_name
launch_segmentalign2d_to_match_classes_against_projections
match_reprojections_to_classes
merge_prj_stacks_and_collect_prj_info
perform_projection_or_pick_up_completed_prj_in_case_of_mpi
prepare_class_avg_stack
prepare_merged_stack_of_projections
prepare_merged_stack_of_projections_mpi
prepare_prj_through_series_of_models
prepare_sr3d_object_with_filter_settings
prepare_volume_for_projection
summarize_prj_info
udpate_segments_in_spring_db_with_assigned_model