Documented functions with links to source¶

Program to interactively explore grid searches according to different criteria

class seggridexplore.SegGridExplorePar[source]¶

Class to initiate default dictionary with input parameters including help and range values and status dictionary

Methods

define_parameters_and_their_properties
define_program_states
set_file_prefix_symmetry_grid
set_parameter_pair_to_be_extracted
set_reconstitute_grid
set_subgrid_merge_option

define_parameters_and_their_properties()[source]¶

define_program_states()[source]¶

set_file_prefix_symmetry_grid(feature_set)[source]¶

set_parameter_pair_to_be_extracted(feature_set)[source]¶

set_subgrid_merge_option(feature_set)[source]¶

set_reconstitute_grid(feature_set)[source]¶

class seggridexplore.SegGridExplorePreparation(parset=None)[source]¶

class seggridexplore.SegGridExploreSupport[source]¶

Methods

convert_None2nan(x)

Converts None objects to nan, for use in NumPy arrays.

get_all_attr_from_search_result
get_common_criterias
get_criterias
get_general_grid_parameters
get_grid_information_from_database
get_rises_and_rotations_and_entered_symmetry_grid

convert_None2nan(x)[source]¶: Converts None objects to nan, for use in NumPy arrays. Returns an array. >>> from spring.segment3d.seggridexplore import SegGridExploreSupport >>> SegGridExploreSupport().convert_None2nan(5*[None]) [nan, nan, nan, nan, nan]

get_general_grid_parameters(grid_file)[source]¶

get_rises_and_rotations_and_entered_symmetry_grid(grid_combinations)[source]¶

get_all_attr_from_search_result(all_grid_combinations, db_attr, filtered_attr, grid_data, zlabels, table)[source]¶

get_common_criterias()[source]¶

get_criterias()[source]¶

get_grid_information_from_database(grid_file)[source]¶

class seggridexplore.SegGridExploreGuiPane(parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = Qt.WindowFlags())[source]¶

Methods

`PaintDeviceMetric`	Attributes
`RenderFlag`	Attributes
`RenderFlags`(…)
`acceptDrops`(self)
`accessibleDescription`(self)
`accessibleName`(self)
`actionEvent`(self, QActionEvent)
`actions`(self)
`activateWindow`(self)
`addAction`(self, QAction)
`addActions`(self, object)
`adjustSize`(self)
`autoFillBackground`(self)
`backgroundRole`(self)
`baseSize`(self)
`blockSignals`(self, bool)
`changeEvent`(self, QEvent)
`childAt`(self, QPoint)	childAt(self, int, int) -> QWidget
`childEvent`(self, QChildEvent)
`children`(self)
`childrenRect`(self)
`childrenRegion`(self)
`clearFocus`(self)
`clearMask`(self)
`close`(self)
`closeEvent`(self, QCloseEvent)
`colorCount`(self)
`connectNotify`(self, QMetaMethod)
`contentsMargins`(self)
`contentsRect`(self)
`contextMenuEvent`(self, QContextMenuEvent)
`contextMenuPolicy`(self)
`create`(self, window, initializeWindow, …)
`createWindowContainer`(QWindow, parent, …)
`cursor`(self)
`customContextMenuRequested`	customContextMenuRequested(self, QPoint) [signal]
`customEvent`(self, QEvent)
`deleteLater`(self)
`depth`(self)
`destroy`(self, destroyWindow, destroySubWindows)
`destroyed`	destroyed(self, QObject = None) [signal]
`devType`(self)
`devicePixelRatio`(self)
`devicePixelRatioF`(self)
`devicePixelRatioFScale`()
`disconnect`(self)
`disconnectNotify`(self, QMetaMethod)
`dragEnterEvent`(self, QDragEnterEvent)
`dragLeaveEvent`(self, QDragLeaveEvent)
`dragMoveEvent`(self, QDragMoveEvent)
`dropEvent`(self, QDropEvent)
`dumpObjectInfo`(self)
`dumpObjectTree`(self)
`dynamicPropertyNames`(self)
`effectiveWinId`(self)
`ensurePolished`(self)
`enterEvent`(self, QEvent)
`event`(self, QEvent)
`eventFilter`(self, QObject, QEvent)
`find`(sip.voidptr)
`findChild`(self, type, name, options, …)	findChild(self, Tuple, name: str = ‘’, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> QObject
`findChildren`(self, type, name, options, …)	findChildren(self, Tuple, name: str = ‘’, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject]
`focusInEvent`(self, QFocusEvent)
`focusNextChild`(self)
`focusNextPrevChild`(self, bool)
`focusOutEvent`(self, QFocusEvent)
`focusPolicy`(self)
`focusPreviousChild`(self)
`focusProxy`(self)
`focusWidget`(self)
`font`(self)
`fontInfo`(self)
`fontMetrics`(self)
`foregroundRole`(self)
`frameGeometry`(self)
`frameSize`(self)
`geometry`(self)
`getContentsMargins`(self)
`grab`(self, rectangle)
`grabGesture`(self, Qt.GestureType, flags, …)
`grabKeyboard`(self)
`grabMouse`(self) grabMouse(self, …)
`grabShortcut`(self, Union[QKeySequence, …)
`graphicsEffect`(self)
`graphicsProxyWidget`(self)
`hasFocus`(self)
`hasHeightForWidth`(self)
`hasMouseTracking`(self)
`height`(self)
`heightForWidth`(self, int)
`heightMM`(self)
`hide`(self)
`hideEvent`(self, QHideEvent)
`inherits`(self, str)
`initPainter`(self, QPainter)
`inputMethodEvent`(self, QInputMethodEvent)
`inputMethodHints`(self)
`inputMethodQuery`(self, Qt.InputMethodQuery)
`insertAction`(self, QAction, QAction)
`insertActions`(self, QAction, Iterable[QAction])
`installEventFilter`(self, QObject)
`isActiveWindow`(self)
`isAncestorOf`(self, QWidget)
`isEnabled`(self)
`isEnabledTo`(self, QWidget)
`isFullScreen`(self)
`isHidden`(self)
`isLeftToRight`(self)
`isMaximized`(self)
`isMinimized`(self)
`isModal`(self)
`isRightToLeft`(self)
`isSignalConnected`(self, QMetaMethod)
`isVisible`(self)
`isVisibleTo`(self, QWidget)
`isWidgetType`(self)
`isWindow`(self)
`isWindowModified`(self)
`isWindowType`(self)
`keyPressEvent`(self, QKeyEvent)
`keyReleaseEvent`(self, QKeyEvent)
`keyboardGrabber`()
`killTimer`(self, int)
`layout`(self)
`layoutDirection`(self)
`leaveEvent`(self, QEvent)
`locale`(self)
`logicalDpiX`(self)
`logicalDpiY`(self)
`lower`(self)
`mapFrom`(self, QWidget, QPoint)
`mapFromGlobal`(self, QPoint)
`mapFromParent`(self, QPoint)
`mapTo`(self, QWidget, QPoint)
`mapToGlobal`(self, QPoint)
`mapToParent`(self, QPoint)
`mask`(self)
`maximumHeight`(self)
`maximumSize`(self)
`maximumWidth`(self)
`metaObject`(self)
`metric`(self, QPaintDevice.PaintDeviceMetric)
`minimumHeight`(self)
`minimumSize`(self)
`minimumSizeHint`(self)
`minimumWidth`(self)
`mouseDoubleClickEvent`(self, QMouseEvent)
`mouseGrabber`()
`mouseMoveEvent`(self, QMouseEvent)
`mousePressEvent`(self, QMouseEvent)
`mouseReleaseEvent`(self, QMouseEvent)
`move`(self, QPoint) move(self, int, int)
`moveEvent`(self, QMoveEvent)
`moveToThread`(self, QThread)
`nativeEvent`(self, Union[QByteArray, bytes, …)
`nativeParentWidget`(self)
`nextInFocusChain`(self)
`normalGeometry`(self)
`objectName`(self)
`objectNameChanged`	objectNameChanged(self, str) [signal]
`overrideWindowFlags`(self, …)
`overrideWindowState`(self, …)
`paintEngine`(self)
`paintEvent`(self, QPaintEvent)
`paintingActive`(self)
`palette`(self)
`parent`(self)
`parentWidget`(self)
`physicalDpiX`(self)
`physicalDpiY`(self)
`pos`(self)
`previousInFocusChain`(self)
`property`(self, str)
`pyqtConfigure`(…)	Each keyword argument is either the name of a Qt property or a Qt signal.
`raise_`(self)
`receivers`(self, PYQT_SIGNAL)
`rect`(self)
`releaseKeyboard`(self)
`releaseMouse`(self)
`releaseShortcut`(self, int)
`removeAction`(self, QAction)
`removeEventFilter`(self, QObject)
`render`(self, QPaintDevice, targetOffset, …)
`repaint`(self) repaint repaint repaint(self, …)
`resize`(self, QSize) resize(self, int, int)
`resizeEvent`(self, QResizeEvent)
`restoreGeometry`(self, Union[QByteArray, …)
`saveGeometry`(self)
`scroll`(self, int, int) scroll(self, int, …)
`sender`(self)
`senderSignalIndex`(self)
`setAcceptDrops`(self, bool)
`setAccessibleDescription`(self, str)
`setAccessibleName`(self, str)
`setAttribute`(self, Qt.WidgetAttribute, on)
`setAutoFillBackground`(self, bool)
`setBackgroundRole`(self, QPalette.ColorRole)
`setBaseSize`(self, int, …)
`setContentsMargins`(self, int, int, int, …)
`setContextMenuPolicy`(self, Qt.ContextMenuPolicy)
`setCursor`(self, Union[QCursor, Qt.CursorShape])
`setDisabled`(self, bool)
`setEnabled`(self, bool)
`setFixedHeight`(self, int)
`setFixedSize`(self, QSize) setFixedSize(self, …)
`setFixedWidth`(self, int)
`setFocus`(self) setFocus(self, Qt.FocusReason)
`setFocusPolicy`(self, Qt.FocusPolicy)
`setFocusProxy`(self, QWidget)
`setFont`(self, QFont)
`setForegroundRole`(self, QPalette.ColorRole)
`setGeometry`(self, QRect) setGeometry(self, …)
`setGraphicsEffect`(self, QGraphicsEffect)
`setHidden`(self, bool)
`setInputMethodHints`(self, …)
`setLayout`(self, QLayout)
`setLayoutDirection`(self, Qt.LayoutDirection)
`setLocale`(self, QLocale)
`setMask`(self, QBitmap) setMask(self, QRegion)
`setMaximumHeight`(self, int)
`setMaximumSize`(self, int, …)
`setMaximumWidth`(self, int)
`setMinimumHeight`(self, int)
`setMinimumSize`(self, int, …)
`setMinimumWidth`(self, int)
`setMouseTracking`(self, bool)
`setObjectName`(self, str)
`setPalette`(self, QPalette)
`setParent`(self, QWidget) setParent(self, …)
`setProperty`(self, str, Any)
`setShortcutAutoRepeat`(self, int, enabled)
`setShortcutEnabled`(self, int, enabled)
`setSizeIncrement`(self, int, …)
`setSizePolicy`(self, …)
`setStatusTip`(self, str)
`setStyle`(self, QStyle)
`setStyleSheet`(self, str)
`setTabOrder`(QWidget, QWidget)
`setToolTip`(self, str)
`setToolTipDuration`(self, int)
`setUpdatesEnabled`(self, bool)
`setVisible`(self, bool)
`setWhatsThis`(self, str)
`setWindowFilePath`(self, str)
`setWindowFlags`(self, Union[Qt.WindowFlags, …)
`setWindowIcon`(self, QIcon)
`setWindowIconText`(self, str)
`setWindowModality`(self, Qt.WindowModality)
`setWindowModified`(self, bool)
`setWindowOpacity`(self, float)
`setWindowRole`(self, str)
`setWindowState`(self, Union[Qt.WindowStates, …)
`setWindowTitle`(self, str)
`sharedPainter`(self)
`show`(self)
`showEvent`(self, QShowEvent)
`showFullScreen`(self)
`showMaximized`(self)
`showMinimized`(self)
`showNormal`(self)
`signalsBlocked`(self)
`size`(self)
`sizeHint`(self)
`sizeIncrement`(self)
`sizePolicy`(self)
`stackUnder`(self, QWidget)
`startTimer`(self, int, timerType)
`statusTip`(self)
`style`(self)
`styleSheet`(self)
`tabletEvent`(self, QTabletEvent)
`testAttribute`(self, Qt.WidgetAttribute)
`thread`(self)
`timerEvent`(self, QTimerEvent)
`toolTip`(self)
`toolTipDuration`(self)
`tr`(self, str, disambiguation, n)
`underMouse`(self)
`ungrabGesture`(self, Qt.GestureType)
`unsetCursor`(self)
`unsetLayoutDirection`(self)
`unsetLocale`(self)
`update`(self) update update update(self, int, …)
`updateGeometry`(self)
`updateMicroFocus`(self)
`updatesEnabled`(self)
`visibleRegion`(self)
`whatsThis`(self)
`wheelEvent`(self, QWheelEvent)
`width`(self)
`widthMM`(self)
`winId`(self)
`window`(self)
`windowFilePath`(self)
`windowFlags`(self)
`windowHandle`(self)
`windowIcon`(self)
`windowIconChanged`	windowIconChanged(self, QIcon) [signal]
`windowIconText`(self)
`windowIconTextChanged`	windowIconTextChanged(self, str) [signal]
`windowModality`(self)
`windowOpacity`(self)
`windowRole`(self)
`windowState`(self)
`windowTitle`(self)
`windowTitleChanged`	windowTitleChanged(self, str) [signal]
`windowType`(self)
`x`(self)
`y`(self)

add_1d_plot
add_3d_surface_tab
add_additional_1d_tab
define_2d_index_for_1d_profile
define_labels_for_1d_profile
exitApp
get_corresponding_symmetry_pair_from_picked_indices
get_stack_index_from_rise_and_rotation_index
launch_external_viewer_from_index
launch_external_viewers
launch_external_viewers_from1d
launch_external_viewers_from_index_pair
prepare_table_matrix_from_symmetry_grid_pairs
setup_matrix_image_plot

setup_matrix_image_plot()[source]¶

get_corresponding_symmetry_pair_from_picked_indices(index_pair)[source]¶

add_1d_plot(index_pair, symmetry_pair)[source]¶

add_additional_1d_tab(index_pair)[source]¶

add_3d_surface_tab()[source]¶

define_labels_for_1d_profile(label)[source]¶

define_2d_index_for_1d_profile(index_pair)[source]¶

launch_external_viewers_from1d(picked_pair_from1d)[source]¶

launch_external_viewers(index)[source]¶

launch_external_viewer_from_index(stack_index)[source]¶

launch_external_viewers_from_index_pair(index_pair)[source]¶

get_stack_index_from_rise_and_rotation_index(x_index, y_index)[source]¶

exitApp()[source]¶

prepare_table_matrix_from_symmetry_grid_pairs(symmetry_grid_np, symmetry_grid_pairs)[source]¶

class seggridexplore.SegGridExploreGui(parent: QWidget = None, flags: Union[Qt.WindowFlags, Qt.WindowType] = Qt.WindowFlags())[source]¶

Methods

`PaintDeviceMetric`	Attributes
`RenderFlag`	Attributes
`RenderFlags`(…)
`acceptDrops`(self)
`accessibleDescription`(self)
`accessibleName`(self)
`actionEvent`(self, QActionEvent)
`actions`(self)
`activateWindow`(self)
`addAction`(self, QAction)
`addActions`(self, object)
`adjustSize`(self)
`autoFillBackground`(self)
`backgroundRole`(self)
`baseSize`(self)
`blockSignals`(self, bool)
`changeEvent`(self, QEvent)
`childAt`(self, QPoint)	childAt(self, int, int) -> QWidget
`childEvent`(self, QChildEvent)
`children`(self)
`childrenRect`(self)
`childrenRegion`(self)
`clearFocus`(self)
`clearMask`(self)
`close`(self)
`closeEvent`(self, QCloseEvent)
`colorCount`(self)
`connectNotify`(self, QMetaMethod)
`contentsMargins`(self)
`contentsRect`(self)
`contextMenuEvent`(self, QContextMenuEvent)
`contextMenuPolicy`(self)
`convert_None2nan`(x)	Converts None objects to nan, for use in NumPy arrays.
`create`(self, window, initializeWindow, …)
`createWindowContainer`(QWindow, parent, …)
`cursor`(self)
`customContextMenuRequested`	customContextMenuRequested(self, QPoint) [signal]
`customEvent`(self, QEvent)
`deleteLater`(self)
`depth`(self)
`destroy`(self, destroyWindow, destroySubWindows)
`destroyed`	destroyed(self, QObject = None) [signal]
`devType`(self)
`devicePixelRatio`(self)
`devicePixelRatioF`(self)
`devicePixelRatioFScale`()
`disconnect`(self)
`disconnectNotify`(self, QMetaMethod)
`dragEnterEvent`(self, QDragEnterEvent)
`dragLeaveEvent`(self, QDragLeaveEvent)
`dragMoveEvent`(self, QDragMoveEvent)
`dropEvent`(self, QDropEvent)
`dumpObjectInfo`(self)
`dumpObjectTree`(self)
`dynamicPropertyNames`(self)
`effectiveWinId`(self)
`ensurePolished`(self)
`enterEvent`(self, QEvent)
`event`(self, QEvent)
`eventFilter`(self, QObject, QEvent)
`find`(sip.voidptr)
`findChild`(self, type, name, options, …)	findChild(self, Tuple, name: str = ‘’, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> QObject
`findChildren`(self, type, name, options, …)	findChildren(self, Tuple, name: str = ‘’, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, type, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, Tuple, QRegExp, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, type, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject] findChildren(self, Tuple, QRegularExpression, options: Union[Qt.FindChildOptions, Qt.FindChildOption] = Qt.FindChildrenRecursively) -> List[QObject]
`focusInEvent`(self, QFocusEvent)
`focusNextChild`(self)
`focusNextPrevChild`(self, bool)
`focusOutEvent`(self, QFocusEvent)
`focusPolicy`(self)
`focusPreviousChild`(self)
`focusProxy`(self)
`focusWidget`(self)
`font`(self)
`fontInfo`(self)
`fontMetrics`(self)
`foregroundRole`(self)
`frameGeometry`(self)
`frameSize`(self)
`geometry`(self)
`getContentsMargins`(self)
`grab`(self, rectangle)
`grabGesture`(self, Qt.GestureType, flags, …)
`grabKeyboard`(self)
`grabMouse`(self) grabMouse(self, …)
`grabShortcut`(self, Union[QKeySequence, …)
`graphicsEffect`(self)
`graphicsProxyWidget`(self)
`hasFocus`(self)
`hasHeightForWidth`(self)
`hasMouseTracking`(self)
`height`(self)
`heightForWidth`(self, int)
`heightMM`(self)
`hide`(self)
`hideEvent`(self, QHideEvent)
`inherits`(self, str)
`initPainter`(self, QPainter)
`inputMethodEvent`(self, QInputMethodEvent)
`inputMethodHints`(self)
`inputMethodQuery`(self, Qt.InputMethodQuery)
`insertAction`(self, QAction, QAction)
`insertActions`(self, QAction, Iterable[QAction])
`installEventFilter`(self, QObject)
`isActiveWindow`(self)
`isAncestorOf`(self, QWidget)
`isEnabled`(self)
`isEnabledTo`(self, QWidget)
`isFullScreen`(self)
`isHidden`(self)
`isLeftToRight`(self)
`isMaximized`(self)
`isMinimized`(self)
`isModal`(self)
`isRightToLeft`(self)
`isSignalConnected`(self, QMetaMethod)
`isVisible`(self)
`isVisibleTo`(self, QWidget)
`isWidgetType`(self)
`isWindow`(self)
`isWindowModified`(self)
`isWindowType`(self)
`keyPressEvent`(self, QKeyEvent)
`keyReleaseEvent`(self, QKeyEvent)
`keyboardGrabber`()
`killTimer`(self, int)
`layout`(self)
`layoutDirection`(self)
`leaveEvent`(self, QEvent)
`locale`(self)
`logicalDpiX`(self)
`logicalDpiY`(self)
`lower`(self)
`mapFrom`(self, QWidget, QPoint)
`mapFromGlobal`(self, QPoint)
`mapFromParent`(self, QPoint)
`mapTo`(self, QWidget, QPoint)
`mapToGlobal`(self, QPoint)
`mapToParent`(self, QPoint)
`mask`(self)
`maximumHeight`(self)
`maximumSize`(self)
`maximumWidth`(self)
`metaObject`(self)
`metric`(self, QPaintDevice.PaintDeviceMetric)
`minimumHeight`(self)
`minimumSize`(self)
`minimumSizeHint`(self)
`minimumWidth`(self)
`mouseDoubleClickEvent`(self, QMouseEvent)
`mouseGrabber`()
`mouseMoveEvent`(self, QMouseEvent)
`mousePressEvent`(self, QMouseEvent)
`mouseReleaseEvent`(self, QMouseEvent)
`move`(self, QPoint) move(self, int, int)
`moveEvent`(self, QMoveEvent)
`moveToThread`(self, QThread)
`nativeEvent`(self, Union[QByteArray, bytes, …)
`nativeParentWidget`(self)
`nextInFocusChain`(self)
`normalGeometry`(self)
`objectName`(self)
`objectNameChanged`	objectNameChanged(self, str) [signal]
`overrideWindowFlags`(self, …)
`overrideWindowState`(self, …)
`paintEngine`(self)
`paintEvent`(self, QPaintEvent)
`paintingActive`(self)
`palette`(self)
`parent`(self)
`parentWidget`(self)
`physicalDpiX`(self)
`physicalDpiY`(self)
`pos`(self)
`previousInFocusChain`(self)
`property`(self, str)
`pyqtConfigure`(…)	Each keyword argument is either the name of a Qt property or a Qt signal.
`raise_`(self)
`receivers`(self, PYQT_SIGNAL)
`rect`(self)
`releaseKeyboard`(self)
`releaseMouse`(self)
`releaseShortcut`(self, int)
`removeAction`(self, QAction)
`removeEventFilter`(self, QObject)
`render`(self, QPaintDevice, targetOffset, …)
`repaint`(self) repaint repaint repaint(self, …)
`resize`(self, QSize) resize(self, int, int)
`resizeEvent`(self, QResizeEvent)
`restoreGeometry`(self, Union[QByteArray, …)
`saveGeometry`(self)
`scroll`(self, int, int) scroll(self, int, …)
`sender`(self)
`senderSignalIndex`(self)
`setAcceptDrops`(self, bool)
`setAccessibleDescription`(self, str)
`setAccessibleName`(self, str)
`setAttribute`(self, Qt.WidgetAttribute, on)
`setAutoFillBackground`(self, bool)
`setBackgroundRole`(self, QPalette.ColorRole)
`setBaseSize`(self, int, …)
`setContentsMargins`(self, int, int, int, …)
`setContextMenuPolicy`(self, Qt.ContextMenuPolicy)
`setCursor`(self, Union[QCursor, Qt.CursorShape])
`setDisabled`(self, bool)
`setEnabled`(self, bool)
`setFixedHeight`(self, int)
`setFixedSize`(self, QSize) setFixedSize(self, …)
`setFixedWidth`(self, int)
`setFocus`(self) setFocus(self, Qt.FocusReason)
`setFocusPolicy`(self, Qt.FocusPolicy)
`setFocusProxy`(self, QWidget)
`setFont`(self, QFont)
`setForegroundRole`(self, QPalette.ColorRole)
`setGeometry`(self, QRect) setGeometry(self, …)
`setGraphicsEffect`(self, QGraphicsEffect)
`setHidden`(self, bool)
`setInputMethodHints`(self, …)
`setLayout`(self, QLayout)
`setLayoutDirection`(self, Qt.LayoutDirection)
`setLocale`(self, QLocale)
`setMask`(self, QBitmap) setMask(self, QRegion)
`setMaximumHeight`(self, int)
`setMaximumSize`(self, int, …)
`setMaximumWidth`(self, int)
`setMinimumHeight`(self, int)
`setMinimumSize`(self, int, …)
`setMinimumWidth`(self, int)
`setMouseTracking`(self, bool)
`setObjectName`(self, str)
`setPalette`(self, QPalette)
`setParent`(self, QWidget) setParent(self, …)
`setProperty`(self, str, Any)
`setShortcutAutoRepeat`(self, int, enabled)
`setShortcutEnabled`(self, int, enabled)
`setSizeIncrement`(self, int, …)
`setSizePolicy`(self, …)
`setStatusTip`(self, str)
`setStyle`(self, QStyle)
`setStyleSheet`(self, str)
`setTabOrder`(QWidget, QWidget)
`setToolTip`(self, str)
`setToolTipDuration`(self, int)
`setUpdatesEnabled`(self, bool)
`setVisible`(self, bool)
`setWhatsThis`(self, str)
`setWindowFilePath`(self, str)
`setWindowFlags`(self, Union[Qt.WindowFlags, …)
`setWindowIcon`(self, QIcon)
`setWindowIconText`(self, str)
`setWindowModality`(self, Qt.WindowModality)
`setWindowModified`(self, bool)
`setWindowOpacity`(self, float)
`setWindowRole`(self, str)
`setWindowState`(self, Union[Qt.WindowStates, …)
`setWindowTitle`(self, str)
`sharedPainter`(self)
`show`(self)
`showEvent`(self, QShowEvent)
`showFullScreen`(self)
`showMaximized`(self)
`showMinimized`(self)
`showNormal`(self)
`signalsBlocked`(self)
`size`(self)
`sizeHint`(self)
`sizeIncrement`(self)
`sizePolicy`(self)
`stackUnder`(self, QWidget)
`startTimer`(self, int, timerType)
`statusTip`(self)
`style`(self)
`styleSheet`(self)
`tabletEvent`(self, QTabletEvent)
`testAttribute`(self, Qt.WidgetAttribute)
`thread`(self)
`timerEvent`(self, QTimerEvent)
`toolTip`(self)
`toolTipDuration`(self)
`tr`(self, str, disambiguation, n)
`underMouse`(self)
`ungrabGesture`(self, Qt.GestureType)
`unsetCursor`(self)
`unsetLayoutDirection`(self)
`unsetLocale`(self)
`update`(self) update update update(self, int, …)
`updateGeometry`(self)
`updateMicroFocus`(self)
`updatesEnabled`(self)
`visibleRegion`(self)
`whatsThis`(self)
`wheelEvent`(self, QWheelEvent)
`width`(self)
`widthMM`(self)
`winId`(self)
`window`(self)
`windowFilePath`(self)
`windowFlags`(self)
`windowHandle`(self)
`windowIcon`(self)
`windowIconChanged`	windowIconChanged(self, QIcon) [signal]
`windowIconText`(self)
`windowIconTextChanged`	windowIconTextChanged(self, str) [signal]
`windowModality`(self)
`windowOpacity`(self)
`windowRole`(self)
`windowState`(self)
`windowTitle`(self)
`windowTitleChanged`	windowTitleChanged(self, str) [signal]
`windowType`(self)
`x`(self)
`y`(self)

get_all_attr_from_search_result
get_common_criterias
get_criterias
get_general_grid_parameters
get_grid_information_from_database
get_rises_and_rotations_and_entered_symmetry_grid
saveEmFile
update_panes

update_panes(value)[source]¶

saveEmFile()[source]¶

class seggridexplore.SegGridExploreMerge(parset=None)[source]¶

Methods

check_whether_seamless_grid_merging_is_possible(…)

>>> from spring.segment3d.seggridexplore import SegGridExplore

merge_grids_from_files
merge_subgrids_into_single_grid_file
perform_simple_additive_merge
update_new_grid_min_and_max_after_merge
write_symbolic_links_to_have_merged_data_in_one_place

perform_simple_additive_merge(sorted_subgrid_files)[source]¶

check_whether_seamless_grid_merging_is_possible(primary_min, primary_max, primary_inc)[source]¶

>>> from spring.segment3d.seggridexplore import SegGridExplore
>>> s = SegGridExplore()
>>> s.check_whether_seamless_grid_merging_is_possible([16.25, 16.36], [16.35, 16.45], [0.01])
>>> s.check_whether_seamless_grid_merging_is_possible([16.25, 16.38], [16.35, 16.45], [0.01])
Traceback (most recent call last):
  File '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/doctest.py', line 1254, in __run
    compileflags, 1) in test.globs
  File '<doctest spring.segment3d.seggridexplore.SegGridExploreMerge.check_whether_seamless_grid_merging_is_possible[3]>', line 1, in <module>
    s.check_whether_seamless_grid_merging_is_possible([16.25, 16.38], [16.35, 16.45], [0.01])
  File '/Users/sachse/Documents/en_casa/EMBL/08_python/26_springbox/develop-eggs/spring-dev/spring/segment3d/seggridexplore.py', line 517, in check_whether_seamless_grid_merging_is_possible
    raise ValueError(msg)
ValueError: You have specified grid datbases to be merged that can not be merged seamlessly without gaps into a continuous grid.

update_new_grid_min_and_max_after_merge(primary_min, primary_max, second_min, second_max, merged_session)[source]¶

merge_grids_from_files(sorted_subgrid_files, primary_min, primary_max, second_min, second_max, primary_inc, second_inc, same_increments)[source]¶

merge_subgrids_into_single_grid_file(subgrid_files)[source]¶

write_symbolic_links_to_have_merged_data_in_one_place(grid_session)[source]¶

class seggridexplore.SegGridExplore(parset=None)[source]¶

Methods

check_whether_seamless_grid_merging_is_possible(…)

>>> from spring.segment3d.seggridexplore import SegGridExplore

extract_desired_em_files
launch_seggridexplore
launch_seggridexplore_gui
merge_grids_from_files
merge_subgrids_into_single_grid_file
perform_simple_additive_merge
update_new_grid_min_and_max_after_merge
write_symbolic_links_to_have_merged_data_in_one_place

launch_seggridexplore_gui(feature_set)[source]¶

extract_desired_em_files()[source]¶

launch_seggridexplore()[source]¶

seggridexplore.main()[source]¶